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Director Of Bioinformatics Resume

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Berkeley, CA

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TECHNICAL SKILLS:

LANGUAGES: PHP, PYTHON, PERL, C, COBOL,SQL, SQR, UNIX SCRIPTING, COLDFUSION, JAVA, AWK, PL/SQL, CGI, CSS, HTML, JAVASCRIPT

DATABASE SYSTEMS: ORACLE 11G, ORACLE 10G, ORACLE 9I, MYSQL, POSTGRES, IMAGE3000

SOFTWARE: Control M, Tivoli, Putty, Microsoft Project, MS word, MS Excel, MS Power Point, Visio, Remedy, Bottomline Paybase, Peoplesoft, SAP, Eclipse, Peoplesoft Application Engine, Peoplesoft Application Designer, Peoplesoft Query Tool, Peoplesoft Data Mover, Bugzilla, Paymentech, Splunk, QUERY3000

OPERATING SYSTEMS: IBM AIX UNIX, HP UX UNIX, SOLARIS 10, 9, REDHAT LINUX, DEBIAN LINUX, UBUNTU LINUX, OSX, MPE, MPEX

FORMATED DATA PROCOLS: XML, JSON, REST, FASTA, GTF, GFF

EXPERIENCE:

Director of Bioinformatics

Confidential, Berkeley, CA

Responsibilities:

  • Managed teams that were tasked with developing an application that scraped medical databases and processed the information via an Confidential and then transfer the resulting dataset into a machine learning engine that finds meaning and stores that information in an mySQL database.
  • My teams worked on web based visual interfaces to visualize and interact with biological data.
  • One of my teams is developing Virtual Reality (VR) hardware and software to render the next phase of biological data visualization.
  • I designed and build a telepresence robot using a Raspberry Pi and an Apple iPad, in order for one of our scientists in Portugal to attend lab meetings and other events.
  • I used an agile scrum project management method to guide my teams.

Software Engineer

Confidential, San Francisco, CA

Responsibilities:

  • We identified 78 different web elements, such as buttons, tables, header, input boxes etc., that are used to construct a web page, and automate some aspects of the process, in order to allow non technical staff to drive the process.
  • The main technologies used are, Javascript, React, Python, Perl, MariaDB, Unix Scripting, CSS and HTML.

System Architect

Confidential, San Jose, CA

Responsibilities:

  • I designed systems that allow information security ( Confidential ) personnel to monitor access to Confidential 's IP assets and track how often they are being accessed and who is accessing the information.
  • We used an agile/scrum project management methodology and the technologies, we used are Tableau, Python, PHP, Perl, Javascript, Unix scripting, CSS and HTML.

Consultant, Payment Systems Analyst

Confidential, Sunnyvale, CA

Responsibilities:

  • my tasks were to analyze and remediate undesired events that took place in the payment system and insure that Confidential compliance was maintained.
  • We would be alerted to an event via Bugzilla, email or Splunk.
  • The payment system ran on Linux platforms, using an Oracle DB, and was coded in JAVA, JAVASCRIPT, PHP, PERL and Unix scripts.
  • Confidential employ an agile project methodology.

Lead Software Engineer

Confidential, Walnut Creek, CA

Responsibilities:

  • Developed and supported the components of Confidential 's payment systems in all it's 1,200 plus stores, 1,000 of which had pharmacies.
  • Confidential compliance was always an important consideration in all are updates and changes to the payments systems and POS systems.
  • The development environment consists of systems based on Linux, and using Python, PHP, Perl, CSS, HTML, Javascript, Java, Unix scripting, and using SQL server databases and Postgres and MySQL databases.
  • Due to the fact that our group supported pharmacy applications, I was HIPAA certification, due to my access to medical information databases.

Project Lead/Software Engineer

Confidential, San Francisco, CA

Responsibilities:

  • Installed and configured Ubuntu Linux, MySql DB, Perl, CPAN and PHP on production and Development servers.
  • Performed Business Analysis, Design and Developed the server side application infrastructure and database that allowed an apple iPhone to be used as a digital wallet and exchange financial and transactional data with the server.
  • The data exchange between the server and iPhone was carried out via REST based APIs.
  • I also developed an OCR program that could read receipts of transactions that were made with the iPhone and captured via it's camera.

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