Architect Resume

SUMMARY:

+5 years’ experience with all stages of Next Generation Sequencing, including data analysis, data QC/QA, experimental design, and sample preparation
Developed tools and pipelines for processing and analyzing large RNAseq data sets
Developed methods and pipelines for detecting novel gene isoforms and test for differential expression
Contributed to annotation of the first sequenced amphibian genome ( Confidential ) and assigned human gene symbols to all genes in v7.2 using an iterative Confidential method. This improved method increased from 50% to +90% the total of named genes
Assigned Gene Ontology terms based on sequence homology to the frog proteome to determine coherent gene set regulation
Background in embryo development, cell differentiation, gene expression, and metabolism
Mentored lab members in experimental design and data analysis
First - author publications and co-authorships in top journals

SKILL:

Data mining, analysis, visualization, and reporting
Excellent understanding of statistics and experimental design
R / Bioconductor; Python: NumPy / Pandas / scikit - learn (basic)
Tophat, Cufflinks, SAMtools, BEDtools
Analysis of gene expression data using Next Generation Sequencing
Functional genome annotation and integration with public databases
Supervised and unsupervised data modeling (basic)
R (+5 years’ experience), Python (1 year), Perl (4 years), and shell (+5 years)
Database querying and basic management (MySQL and Oracle); basic NoSQL
Cluster computing and batch job management in a distributed Linux environment
Expert molecular biologist with +10 years’ experience (DNA / RNA / antibodies / histology)
Generation and phenotypic analysis of mutant and transgenic animals
Ambitious, pragmatic, and self-motivated team player
Detail oriented with excellent organizational and communication skills

WORK EXPERIENCE:

Confidential

Architect

Responsibilities:

Working with Confidential clients to implement and test Life Science enterprise solutions

Confidential

Bioinformatics Consultant

Responsibilities:

Confidential

Associate Specialist, Staff

Responsibilities:

Confidential

Post-Doctoral Research Fellow

Responsibilities:

High-throughput screening for novel gene functions and transcriptional regulation

Confidential

Research Scientist

Responsibilities: